M2E Magento Extension with WebShopApps DropShip
M2E and DropShip will work out of the box if they’re correctly configured. Firstly you need to create a new website and store for M2E and then assign this M2E to use to create orders. This will be documented in the M2E extension and so is not covered here.
http://www.magentocommerce.com/knowledge-base/entry/creating-a-store-view
Now you will need to set DropShip to disabled on the default configuration scope and save the settings.
Finally you will need to enable DropShip on each store views configuration scope that it’s required for. Ensure DropShip is only set to enabled on the stores it’s required for.